Ground Truth
← Ground Truth overview
proteinTP53BRCA1CFTRHBBPAH
41 precomputed genes

HBB

· Sickle cell & β-thalassaemia
AI wrongAI rightno data
Loading 3D structure...
drag · scroll · click a residue
8 / 44
what is HBB?

The beta chain of haemoglobin, the molecule that carries oxygen in red blood cells. One single change (E7V) causes sickle-cell disease.


how the AI did on HBB

AlphaMissense matched the confirmed verdict on 29 of 41 mutations (71%). It missed 10 and raised 2 false alarms.

accuracy
vs doctors
0.76
vs lab
n/a

Note: AlphaMissense was trained on ClinVar, so “vs doctors” partly grades it on its own answer key and reads high. The independent check is “vs lab.” why this matters →

▸ the breakdown · true / false positives
AI vs doctors
25TP
10FN
2FP
4TN

the mutation
E7V
Glu → Val at position 7
✗ AI was wrongFN

AlphaMissense called it harmless, but it is disease-causing. A miss.

what each source says
AlphaMissense
the AI
0.223benign
ClinVar
doctors · ★★
pathogenic↗
Every HBB variant: the raw evidence

Each row: what the AI guessed, and what each real source said. Doctors (ClinVar) is the clinical record the AI was tuned on.

MutationThe AI’s guessClinicalDid the AI get it right?
M1Iharmful0.67harmful★★↗✓ right
M1Kharmful0.73harmful★★↗✓ right
M1Lharmless0.24harmful★★↗✗ missed it
M1Rharmful0.74harmful★★↗✓ right
M1Tunsure0.54harmful★★↗AI unsure
M1Vharmless0.16harmful★★↗✗ missed it
E7Kharmless0.27harmful★★↗✗ missed it
E7Vharmless0.22harmful★★↗✗ missed it
E8Gharmful0.83harmless★★↗✗ false alarm
S10Charmless0.17harmless★★↗✓ right
N20Sharmless0.08harmful★★↗✗ missed it
V21Mharmless0.26harmful★★↗✗ missed it
E27Kharmful0.67harmful★★↗✓ right
A28Sharmless0.17harmful★★★↗✗ missed it
R31Gharmful0.87harmful★★↗✓ right
R31Kharmful0.75harmful★★↗✓ right
R31Tharmful0.94harmful★★↗✓ right
V35Fharmful0.88harmful★★↗✓ right
F43Sharmful0.99harmful★★↗✓ right
H64Nharmful0.99harmful★★↗✓ right
H64Rharmful0.97harmful★★↗✓ right
H64Yharmful0.97harmful★★↗✓ right
K67Tunsure0.51harmful★★↗AI unsure
V68Mharmful0.98harmful★★↗✓ right
L69Fharmful0.71harmful★★↗✓ right
T88Pharmless0.13harmless★★↗✓ right
L89Pharmful0.99harmful★★↗✓ right
H98Qharmful0.90harmful★★↗✓ right
V99Mharmful0.98harmful★★↗✓ right
L107Pharmful0.97harmful★★↗✓ right
G108Dharmful0.99harmful★★↗✓ right
N109Kharmful0.88harmful★★↗✓ right
V110Mharmless0.25harmful★★↗✗ missed it
L111Pharmful0.98harmful★★↗✓ right
L115Pharmful0.97harmful★★↗✓ right
A116Dharmful0.97harmful★★↗✓ right
K121Nharmless0.19harmless★★↗✓ right
E122Kunsure0.53harmful★★↗AI unsure
E122Qharmless0.20harmful★★↗✗ missed it
K133Qharmful0.89harmless★★↗✗ false alarm
H144Rharmless0.24harmful★★↗✗ missed it
H144Yharmless0.25harmless★★↗✓ right
Y146Charmful0.99harmful★★↗✓ right
Y146Nharmful0.98harmful★★↗✓ right
44 variants · “harmful” = disease-causing, “harmless” = benign. Use arrow keys to move between rows and Enter to select one.